Package: phylotypr
Type: Package
Title: Classifying DNA Sequences to Taxonomic Groupings
Version: 0.2.0
Authors@R: 
    person("Pat", "Schloss", , "pschloss@umich.edu",
           role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0002-6935-4275"))
Description: Classification based analysis of DNA sequences to
        taxonomic groupings. This package primarily implements Naive
        Bayesian Classifier from the Ribosomal Database Project. This
        approach has traditionally been used to classify 16S rRNA gene
        sequences to bacterial taxonomic outlines; however, it can be
        used for any type of gene sequence. The method was originally
        described by Wang, Garrity, Tiedje, and Cole in Applied and
        Environmental Microbiology 73(16):5261-7
        <doi:10.1128/AEM.00062-07>. The package also provides functions
        to read in 'FASTA'-formatted sequence data.
License: GPL-3
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
URL: https://github.com/mothur/phylotypr, https://mothur.org/phylotypr/
BugReports: https://github.com/mothur/phylotypr/issues
Roxygen: list(markdown = TRUE)
Suggests: knitr, rmarkdown, purrr, dplyr, testthat (>= 3.0.0), strollur
Config/testthat/edition: 3
Imports: Rcpp, readr (>= 2.1.0), stringi (>= 1.8.0), stats, parallelly
LinkingTo: Rcpp, RcppThread
Depends: R (>= 4.5)
VignetteBuilder: knitr
Config/roxygen2/version: 8.1.1
Config/pak/sysreqs: libicu-dev libx11-dev
Repository: https://mothur.r-universe.dev
Date/Publication: 2026-10-15 17:56:09 UTC
RemoteUrl: https://github.com/mothur/phylotypr
RemoteRef: HEAD
RemoteSha: b2f3a392bda8c9156739ae6c8d4fa3dd32fd9cc8
NeedsCompilation: yes
Packaged: 2026-10-15 20:32:46 UTC; root
Author: Pat Schloss [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-6935-4275>)
Maintainer: Pat Schloss <pschloss@umich.edu>