Package: strollur
Type: Package
Title: Store and Transfer Amplicon Sequence Data
Version: 0.1.2
Date: 2026-06-09
Authors@R: c(
    person("Sarah", "Westcott", role = c("aut"),
        email = "swestcot@umich.edu",
        comment = c(ORCID = "0009-0001-1529-8247")),
    person("Gregory", "Johnson", , "grejoh@umich.edu", role = c("aut"),
        comment = c(ORCID = "0009-0008-3890-0297")),
    person("Pat", "Schloss", , "pschloss@umich.edu",
        role = c("cph", "cre"), comment = c(ORCID = "0000-0002-6935-4275")))
Maintainer: Pat Schloss <pschloss@umich.edu>
Description: Stores the data associated with your amplicon sequence
        analysis. This includes nucleotide sequences, abundance, sample
        and treatment assignments, taxonomic classifications, asv, otu
        and phylotype clusters, metadata, trees and various reports. It
        is designed to facilitate data analysis across multiple R
        packages with utility functions to read / write from 'mothur',
        'qiime2', 'dada2', and 'phyloseq'.
URL: https://github.com/mothur/strollur, https://mothur.org/strollur/
BugReports: https://github.com/mothur/strollur/issues
License: GPL (>= 3)
biocViews:
Imports: Rcpp, cli, methods, microseq, R.utils, R6, waldo, readr, ape,
        dplyr, tidyr, yaml, rbiom (>= 3.1.0), stats, utils
LinkingTo: Rcpp, cli, Rcereal
Depends: R (>= 4.5.0)
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), xml2, phyloseq,
        ggplot2, phylotypr, rhdf5, h5lite, pak
Config/testthat/edition: 3
Encoding: UTF-8
VignetteBuilder: knitr
Config/roxygen2/version: 8.0.0
RoxygenNote: 8.0.0
Config/pak/sysreqs: libicu-dev libjpeg-dev libpng-dev libxml2-dev
        libssl-dev libx11-dev
Repository: https://mothur.r-universe.dev
Date/Publication: 2026-06-19 14:21:28 UTC
RemoteUrl: https://github.com/mothur/strollur
RemoteRef: HEAD
RemoteSha: c830f795de036827a647562e1ab1d1fd5b161c1d
NeedsCompilation: yes
Packaged: 2026-06-25 09:10:04 UTC; root
Author: Sarah Westcott [aut] (ORCID: <https://orcid.org/0009-0001-1529-8247>),
  Gregory Johnson [aut] (ORCID: <https://orcid.org/0009-0008-3890-0297>),
  Pat Schloss [cph, cre] (ORCID: <https://orcid.org/0000-0002-6935-4275>)