Overview | Loading the example dataset | Accessing Your Data | names | count | abundance | report | summary | Sample Trees and Sequence Trees

Saving and Loading | Export and Import | Copy

Overview | Import from mothur | Classify using phylotypr | Diversity Analysis using phyloseq | Create publication-ready plots grouped by treatment | Plot the Shannon Alpha Diversity as a boxplot: | Plot PCoA Beta Diversity: | Deep Dive

Under The Hood | Setting functions | Setting the dataset name | Setting nucleotide sequence strings | Setting sequence abundances | Merging Functions | Removing Functions | Removing Sequences | Removing Bins | Removing Samples

Creating a new dataset | Importing Data | add | Adding FASTA sequences | Adding Custom Reports | Adding Metadata | Adding Resource References | assign | Assigning Abundances | Assigning Bins | Assigning Taxonomic Classifications | Assigning Bin Representatives | Assigning Treatments | Sample Trees and Sequence Trees

Installing strollur | Importing, Accessing and Transfering Data

Using read_mothur() | Importing Individual Files | Writing mothur formatted file types

Reading Individual Files

Overview | Loading the example dataset | Accessing Your Data | names | count | abundance | report | summary | Sample Trees and Sequence Trees

Creating a new dataset | Importing Data | add | Adding FASTA sequences | Adding Custom Reports | Adding Metadata | Adding Resource References | assign | Assigning Abundances | Assigning Bins | Assigning Taxonomic Classifications | Assigning Bin Representatives | Assigning Treatments | Sample Trees and Sequence Trees

Saving and Loading | Export and Import | Copy

Reading Individual Files

Overview | Import from mothur | Classify using phylotypr | Diversity Analysis using phyloseq | Create publication-ready plots grouped by treatment | Plot the Shannon Alpha Diversity as a boxplot: | Plot PCoA Beta Diversity: | Deep Dive

Installing strollur | Importing, Accessing and Transfering Data

Using read_mothur() | Importing Individual Files | Writing mothur formatted file types

Under The Hood | Setting functions | Setting the dataset name | Setting nucleotide sequence strings | Setting sequence abundances | Merging Functions | Removing Functions | Removing Sequences | Removing Bins | Removing Samples

Getting started with | Building the database | Classifying a single unkown sequence | Classifying multiple unknown sequences | Classifying multiple unknown sequences in parallel | Run-to-run variation | Alternative databases