Getting started with phylotypr | Building the database | Classifying a single unknown sequence | Classifying multiple unknown sequences | Classifying multiple unknown sequences in parallel | Run-to-run variation | Alternative databases

Overview | Loading the example dataset | Accessing Your Data | strollur::names | strollur::count | strollur::abundance | strollur::report | strollur::summary

Saving and Loading | Export and Import | Copy

Overview | Import from mothur | Classify using phylotypr | Diversity Analysis using phyloseq | Create publication-ready plots grouped by treatment | Plot the Shannon Alpha Diversity as a boxplot: | Plot PCoA Beta Diversity: | Deep Dive

Under The Hood | Setting functions | Setting the dataset name | Setting nucleotide sequence strings | Setting sequence abundances | Merging Functions | Removing Functions | Removing Sequences | Removing Bins | Removing Samples

Creating a new dataset | Importing Data | strollur::add | Adding FASTA sequences | Adding Custom Reports | Adding Metadata | Adding Resource References | Adding Trees | strollur::assign | Assigning Abundances | Assigning Bins | Assigning Taxonomic Classifications | Assigning Bin Representatives | Assigning Treatments

Installing strollur | Importing, Accessing and Transfering Data

Using strollur::read_mothur() | Importing Individual Files | Writing mothur formatted file types

Reading Individual Files

Overview | Example

Overview | Creating strollur objects | Loading data.frames | Removing chimeras | Results

Overview | Creating strollur objects | Loading data.frames | Removing chimeras | Results

Installing rchime | Tutorials to help you get started